Daily, M.D., D. Masica, A. Sivasubramanian, S. Somarouthu, and J.J. Gray. (2005) CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock. Proteins 60:181-186.

Singh, P., A.M. Mhaka, S.B. Christensen, J.J. Gray, S.R. Denmeade, and J.T. Isaacs. (2005) Applying linear interaction energy method for rational design of non-competitive allosteric inhibitors of the SERCA ATPase. J. Med. Chem. 48:3005-3014.

Gray, J.J. (2004) The interaction of proteins with solid surfaces. Curr. Op. Struct. Biol. 14(1):110-115.

Gray, J.J., S.E. Moughan, T. Kortemme, O. Scheuler-Furman, K.M.S. Misura, A.V. Morozov, and D. Baker. (2003) Protein-protein docking predictions for the CAPRI experiment. Proteins 52(1):118-122.

Gray, J.J., S.E. Moughan, C. Wang, O. Scheuler-Furman, B. Kuhlman, C.A. Rohl, and D. Baker. (2003) Protein-protein docking with simultaneous optimization of rigid body displacement and side chain conformations. J. Mol. Biol. 331(1):281-299.

Gray, J.J., D.H. Klein, B.A. Korgel, and R.T. Bonnecaze. (2001) Microstructure formation and kinetics in the random sequential adsorption of polydisperse tethered nanoparticles modeled as hard disks. Langmuir, 17(8):2317-2328.

Gray, J.J., and R.T. Bonnecaze. (2001) Adsorption of charge-bidisperse mixtures of colloidal particles. Langmuir, 17(25):7935-7947.

Gray, J.J., D.H. Klein, R.T. Bonnecaze, and B.A. Korgel. (2000) Dynamic non-equilibrium phase behavior during the random sequential adsorption of tethered hard disks. Phys. Rev. Lett., 85(21):4430-4433.

Gray, J.J., B. Chiang, and R.T. Bonnecaze. (1999) Colloidal particles: Origin of anomalous multibody interactions. Nature, 402:750 (brief communication).

Gray, J.J. and R.T. Bonnecaze. (1998) Rheology and dynamics of sheared arrays of colloidal particles. J. Rheology, 42(5):1121-1151.